Data downloaded manually from iNat.
Prepare dataset for extracting environmental (climate, topo, soils) data
Import dataset with 30yr normals data
Merge data
Clean data
Add consistency to factors Symptoms
Unhealthy trees
Tree size
Filter data
Only include symptoms of interest
Filtered SHM <200
Import dataset with Decade 2011-2020
Merge data
Clean data
Add consistency to factors Symptoms
Unhealthy trees
Tree size
Filter data
Only include symptoms of interest
## [1] "Healthy"
## [2] "New Dead Top (red or brown needles still attached)"
## [3] "Old Dead Top (needles already gone)"
## [4] "Thinning Canopy"
## [5] "Tree is dead"
Import TOPO Data
Merge data
Clean data
Add consistency to factors Symptoms
Unhealthy trees
Tree size
Filter data
Only include symptoms of interest
## [1] "Healthy"
## [2] "New Dead Top (red or brown needles still attached)"
## [3] "Old Dead Top (needles already gone)"
## [4] "Thinning Canopy"
## [5] "Tree is dead"
## Warning: Removed 36 rows containing non-finite values (stat_boxplot).
## Warning: Removed 36 rows containing non-finite values (stat_boxplot).
## Warning: Removed 36 rows containing non-finite values (stat_boxplot).
## Warning: Removed 36 rows containing missing values (geom_point).
## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 36 rows containing non-finite values (stat_smooth).
## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 36 rows containing non-finite values (stat_smooth).
## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 36 rows containing non-finite values (stat_smooth).
Import Soils Data
Merge data
Add consistency to factors
Symptoms
Unhealthy trees
Tree size
Filter data
Only include symptoms of interest
## [1] "Healthy"
## [2] "New Dead Top (red or brown needles still attached)"
## [3] "Old Dead Top (needles already gone)"
## [4] "Thinning Canopy"
## [5] "Tree is dead"
Observations are filtered to only include those with Soils Data
Only include data with soils data (Oregon and Washington)
## Warning: Removed 621 rows containing non-finite values (stat_boxplot).
## Warning: Removed 33 rows containing non-finite values (stat_boxplot).
## Warning: Removed 3 rows containing non-finite values (stat_boxplot).
## [1] "Healthy" "Unhealthy"
## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 275 rows containing non-finite values (stat_smooth).
## Warning: Removed 275 rows containing non-finite values (stat_boxplot).
## [1] "Healthy" "Unhealthy"
## Warning: Removed 621 rows containing non-finite values (stat_boxplot).
## Warning: Removed 33 rows containing non-finite values (stat_boxplot).
## Warning: Removed 3 rows containing non-finite values (stat_boxplot).
## Warning: Removed 28 rows containing non-finite values (stat_boxplot).